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ASM397071v1

Organism name:
Streptomyces luteoverticillatus (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: CGMCC 15060
BioSample:
SAMN10601522
BioProject:
PRJNA510286
Submitter:
Ludong University
Date:
2018/12/25
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003970715.1 (latest)
RefSeq assembly accession:
GCF_003970715.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 2.3
Expected final version:
no
Genome coverage:
247.0x
Sequencing technology:
PacBio RSII

IDs: 2183691 [UID] 8129968 [GenBank] 8185248 [RefSeq]

See Genome Information for Streptomyces luteoverticillatus

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/07/2022 04:53:56
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,564
CDSs (total)::6,463
Genes (coding)::6,224
CDSs (with protein)::6,224
Genes (RNA)::101
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::77
ncRNAs::3
Pseudo Genes (total)::239
CDSs (without protein)::239
Pseudo Genes (ambiguous residues)::0 of 239
Pseudo Genes (frameshifted)::114 of 239
Pseudo Genes (incomplete)::153 of 239
Pseudo Genes (internal stop)::15 of 239
Pseudo Genes (multiple problems)::35 of 239
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,367,863
Total ungapped length7,367,863
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003970725.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP034587.1=NZ_CP034587.1

Assembly statistics

MoleculeTotal
Length
Chromosome 7,367,863

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces luteoverticillatusStreptomyces luteoverticillatus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014648775.1Streptomyces abikoensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.0681.3385.59

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchdeclared species has no type-assembly
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