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ASM395005v1

Organism name:
Streptomyces sp. KPB2 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: KPB2
BioSample:
SAMN09908040
BioProject:
PRJNA487680
Submitter:
Gyeongsang national university
Date:
2018/12/15
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003950055.1 (latest)
RefSeq assembly accession:
GCF_003950055.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3.0
Expected final version:
yes
Genome coverage:
8.0x
Sequencing technology:
PacBio RSII

IDs: 2170441 [UID] 8094748 [GenBank] 8103238 [RefSeq]

See Genome Information for Streptomyces sp. KPB2

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/13/2022 05:23:50
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,212
CDSs (total)::7,124
Genes (coding)::7,009
CDSs (with protein)::7,009
Genes (RNA)::88
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::67
ncRNAs::3
Pseudo Genes (total)::115
CDSs (without protein)::115
Pseudo Genes (ambiguous residues)::0 of 115
Pseudo Genes (frameshifted)::39 of 115
Pseudo Genes (incomplete)::90 of 115
Pseudo Genes (internal stop)::9 of 115
Pseudo Genes (multiple problems)::22 of 115
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,082,236
Total ungapped length8,082,236
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003950065.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP034353.1=NZ_CP034353.1

Assembly statistics

MoleculeTotal
Length
Chromosome 8,082,236

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. KPB2Streptomyces sp. KPB2

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003112555.1Streptomyces coelicoflavustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.2679.4773.60

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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