U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Try the new Datasets Genome page

ASM394984v1

Organism name:
Streptomyces sp. WAC01280 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: WAC01280
BioSample:
SAMN10396534
BioProject:
PRJNA504665
Submitter:
McMaster University
Date:
2018/12/14
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003949845.1 (latest)
RefSeq assembly accession:
GCF_003949845.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
RPSA01
Assembly method:
SPAdes v. 3.11.1
Expected final version:
yes
Genome coverage:
115.5x
Sequencing technology:
Illumina HiSeq

IDs: 2170311 [UID] 8094528 [GenBank] 8104418 [RefSeq]

See Genome Information for Streptomyces sp. WAC01280

History (Show revision history)

Comment

Bacteria and source DNA available from Gerard Wright wrightge@mcmaster.ca
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/21/2018 09:46:02
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,883
CDSs (total)::7,798
Genes (coding)::7,524
CDSs (with protein)::7,524
Genes (RNA)::85
rRNAs::5, 2, 5 (5S, 16S, 23S)
complete rRNAs::5, 1, 1 (5S, 16S, 23S)
partial rRNAs::1, 4 (16S, 23S)
tRNAs::70
ncRNAs::3
Pseudo Genes (total)::274
CDSs (without protein)::274
Pseudo Genes (ambiguous residues)::0 of 274
Pseudo Genes (frameshifted)::74 of 274
Pseudo Genes (incomplete)::233 of 274
Pseudo Genes (internal stop)::24 of 274
Pseudo Genes (multiple problems)::51 of 274
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,685,052
Total ungapped length8,685,052
Number of contigs26
Contig N501,345,511
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)26

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,685,052268,685,0521,345,51100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. WAC01280Streptomyces sp. WAC01280

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006539185.1Streptomyces gardneritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.3377.0174.05

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
Support Center