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Source database (GenBank or RefSeq) File type

ASM394758v1

Organism name:: Streptomyces sp. WAC 06725 (high G+C Gram-positive bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: WAC 06725
BioSample:: SAMN09238319
BioProject:: PRJNA472056
Submitter:: McMaster University
Date:: 2018/12/14
Assembly type:: na
Assembly level:: Contig
Genome representation:: full
GenBank assembly accession:: GCA_003947585.1 (latest)
RefSeq assembly accession:: GCF_003947585.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: QHJO01
Assembly method:: SPAdes v. 3.11
Expected final version:: yes
Genome coverage:: 43.0x
Sequencing technology:: Illumina MiSeq

IDs: 2169221 [UID] 8092308 [GenBank] 8101758 [RefSeq]

See Genome Information for Streptomyces sp. WAC 06725

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003947585.1	=	GCF_003947585.1	ASM394758v1	Contig	Latest GenBank, Latest RefSeq

Comment

Bacteria and source DNA available from Gerard D Wright, McMaster University, 1280 Main St. West, Hamilton ON, Canada.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::05/30/2018 21:35:20
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::8,621
CDS (total)::8,532
Genes (coding)::8,068
CDS (coding)::8,068
Genes (RNA)::89
rRNAs::6, 8, 6 (5S, 16S, 23S)
complete rRNAs::4, 1 (5S, 16S)
partial rRNAs::2, 7, 6 (5S, 16S, 23S)
tRNAs::66
ncRNAs::3
Pseudo Genes (total)::464
Pseudo Genes (ambiguous residues)::0 of 464
Pseudo Genes (frameshifted)::136 of 464
Pseudo Genes (incomplete)::370 of 464
Pseudo Genes (internal stop)::31 of 464
Pseudo Genes (multiple problems)::67 of 464
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	9,473,859
Total ungapped length	9,473,859
Number of contigs	975
Contig N50	21,249
Contig L50	127
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	975

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	98.71	89.86	90.94

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ASM394758v1

See Genome Information for Streptomyces sp. WAC 06725

Pathogen Detection Resources

History (Show revision history)

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Genome-Annotation-Data

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