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ASM394550v1

Organism name:
Streptomyces sp. WAC 06738 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: WAC 06738
BioSample:
SAMN09238320
BioProject:
PRJNA472056
Submitter:
McMaster University
Date:
2018/12/14
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003945505.1 (latest)
RefSeq assembly accession:
GCF_003945505.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. Jun-2017
Expected final version:
yes
Genome coverage:
148.0x
Sequencing technology:
PacBio

IDs: 2168111 [UID] 8090068 [GenBank] 8108418 [RefSeq]

See Genome Information for Streptomyces sp. WAC 06738

History (Show revision history)

Comment

Bacteria and source DNA available from Gerard D Wright, McMaster University, 1280 Main St West, Hamilton ON, Canada.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/07/2022 04:33:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,212
CDSs (total)::7,136
Genes (coding)::6,880
CDSs (with protein)::6,880
Genes (RNA)::76
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::58
ncRNAs::3
Pseudo Genes (total)::256
CDSs (without protein)::256
Pseudo Genes (ambiguous residues)::0 of 256
Pseudo Genes (frameshifted)::112 of 256
Pseudo Genes (incomplete)::177 of 256
Pseudo Genes (internal stop)::4 of 256
Pseudo Genes (multiple problems)::36 of 256
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,324,535
Total ungapped length8,324,535
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003945515.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP029618.1=NZ_CP029618.1

Assembly statistics

MoleculeTotal
Length
Chromosome 8,324,535

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. WAC 06738Streptomyces sp. WAC 06738

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003865135.1Streptomyces chrestomyceticustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.5612.7311.30

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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