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ASM393505v1

Organism name:
Streptomyces alboflavus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 313
BioSample:
SAMN10319553
BioProject:
PRJNA498577
Submitter:
The institute of Microbiology, Chinese Academy of Sciences
Date:
2018/12/11
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003935055.1 (latest)
RefSeq assembly accession:
GCF_003935055.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
RHGC01
Assembly method:
SOAPdenovo v. 2.04
Expected final version:
no
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq

IDs: 2162731 [UID] 8069938 [GenBank] 8082208 [RefSeq]

See Genome Information for Streptomyces alboflavus

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length8,916,703
Total ungapped length8,915,031
Gaps between scaffolds0
Number of scaffolds16
Scaffold N50893,660
Scaffold L504
Number of contigs67
Contig N50279,686
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)16

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,916,703168,915,031893,660510

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces alboflavusStreptomyces alboflavus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000716675.1Streptomyces alboflavustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000716675.1Streptomyces alboflavustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.1090.1182.68
Best-match type98.1090.1182.68

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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