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ASM393348v1

Organism name:
Streptomyces griseofuscus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 199
BioSample:
SAMN07735371
BioProject:
PRJNA413047
Submitter:
Universidade Federal de Mato Grosso
Date:
2018/12/10
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003933485.1 (latest)
RefSeq assembly accession:
GCF_003933485.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PDES01
Assembly method:
SPAdes v. 3.9
Expected final version:
yes
Genome coverage:
8.0x
Sequencing technology:
Illumina HiSeq

IDs: 2161981 [UID] 8065398 [GenBank] 8075058 [RefSeq]

See Genome Information for Streptomyces griseofuscus

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from Not applicable.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/11/2017 14:14:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,622
CDS (total)::7,539
Genes (coding)::7,180
CDS (coding)::7,180
Genes (RNA)::83
rRNAs::7, 1, 3 (5S, 16S, 23S)
complete rRNAs::7, 1, 1 (5S, 16S, 23S)
partial rRNAs::2 (23S)
tRNAs::69
ncRNAs::3
Pseudo Genes (total)::359
Pseudo Genes (ambiguous residues)::0 of 359
Pseudo Genes (frameshifted)::148 of 359
Pseudo Genes (incomplete)::257 of 359
Pseudo Genes (internal stop)::43 of 359
Pseudo Genes (multiple problems)::80 of 359
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,424,015
Total ungapped length8,423,965
Gaps between scaffolds0
Number of scaffolds131
Scaffold N50460,998
Scaffold L508
Number of contigs132
Contig N50460,998
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)131

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,424,0151318,423,965460,99810

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces griseofuscusStreptomyces griseofuscus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000718315.1Streptomyces griseofuscustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000718315.1Streptomyces griseofuscustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.6591.2885.96
Best-match type98.6591.2885.96

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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