U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Try the new Datasets Genome page

ASM393329v1

Organism name:
Streptomyces griseofuscus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 64
BioSample:
SAMN07735162
BioProject:
PRJNA413037
Submitter:
Universidade Federal de Mato Grosso
Date:
2018/12/10
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003933295.1 (latest)
RefSeq assembly accession:
GCF_003933295.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PDER01
Assembly method:
SPAdes v. 3.9
Expected final version:
yes
Genome coverage:
8.0x
Sequencing technology:
Illumina HiSeq

IDs: 2161851 [UID] 8065198 [GenBank] 8075018 [RefSeq]

See Genome Information for Streptomyces griseofuscus

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from Not applicable.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/11/2017 14:07:29
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,517
CDS (total)::7,435
Genes (coding)::7,086
CDS (coding)::7,086
Genes (RNA)::82
rRNAs::7, 1, 3 (5S, 16S, 23S)
complete rRNAs::7, 1, 1 (5S, 16S, 23S)
partial rRNAs::2 (23S)
tRNAs::68
ncRNAs::3
Pseudo Genes (total)::349
Pseudo Genes (ambiguous residues)::0 of 349
Pseudo Genes (frameshifted)::141 of 349
Pseudo Genes (incomplete)::259 of 349
Pseudo Genes (internal stop)::32 of 349
Pseudo Genes (multiple problems)::77 of 349
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,339,579
Total ungapped length8,339,529
Gaps between scaffolds0
Number of scaffolds79
Scaffold N50323,739
Scaffold L509
Number of contigs80
Contig N50323,739
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)79

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,339,579798,339,529323,73910

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces griseofuscusStreptomyces griseofuscus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000718315.1Streptomyces griseofuscustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000718315.1Streptomyces griseofuscustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.6692.2185.97
Best-match type98.6692.2185.97

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
Support Center