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ASM385188v1

Organism name:
Thermaurantimonas aggregans (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: JCM:31826
Infraspecific name:
Strain: LA
BioSample:
SAMD00143253
BioProject:
PRJDB7512
Submitter:
RIKEN-BRC JCM
Date:
2018/11/22
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003851885.1 (latest)
RefSeq assembly accession:
GCF_003851885.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BHZE01
Assembly method:
SPAdes v. 3.8.1
Genome coverage:
Unknown
Sequencing technology:
Illumina MiSeq

IDs: 2125581 [UID] 7963198 [GenBank] 7973798 [RefSeq]

See Genome Information for Thermaurantimonas aggregans

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Annotated at DFAST https://dfast.nig.ac.jp/

Global statistics

Total sequence length2,671,880
Total ungapped length2,671,880
Number of contigs57
Contig N50110,953
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)57

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,671,880572,671,880110,95300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thermaurantimonas aggregansThermaurantimonas aggregans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_011762485.1Yeosuana marinatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.620.150.10

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected