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ASM384150v1

Organism name:
Natrarchaeobius chitinivorans (euryarchaeotes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AArcht4T
BioSample:
SAMN10160502
BioProject:
PRJNA494305
Submitter:
Winogradsky Institute of Microbiology
Date:
2018/11/26
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003841505.1 (latest)
RefSeq assembly accession:
GCF_003841505.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
REGA01
Assembly method:
SPAdes v. OCT-2015
Expected final version:
yes
Genome coverage:
153x
Sequencing technology:
Illumina MiSeq

IDs: 2122721 [UID] 7945328 [GenBank] 7966668 [RefSeq]

See Genome Information for Natrarchaeobius chitinivorans

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/20/2018 04:28:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,480
CDS (total)::4,427
Genes (coding)::4,263
CDS (coding)::4,263
Genes (RNA)::53
rRNAs::1, 3, 1 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 23S)
partial rRNAs::3 (16S)
tRNAs::46
ncRNAs::2
Pseudo Genes (total)::164
Pseudo Genes (ambiguous residues)::0 of 164
Pseudo Genes (frameshifted)::56 of 164
Pseudo Genes (incomplete)::118 of 164
Pseudo Genes (internal stop)::27 of 164
Pseudo Genes (multiple problems)::33 of 164
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,566,486
Total ungapped length4,566,486
Number of contigs48
Contig N50170,161
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)48

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,566,486484,566,486170,16100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Natrarchaeobius chitinivoransNatrarchaeobius chitinivorans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_008245225.1Natrialba swarupiaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.8927.5529.95

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna