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ASM379052v1

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Isolate:
ECCNB12-2
BioSample:
SAMN07723175
BioProject:
PRJNA412707
Submitter:
Zhejiang Academy of Agricultural Sciences
Date:
2018/11/19
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003790525.1 (latest)
RefSeq assembly accession:
GCF_003790525.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Celera Assembler v. SEP-2017
Expected final version:
yes
Genome coverage:
122.0x
Sequencing technology:
PacBio RSII

IDs: 2107071 [UID] 7873488 [GenBank] 7933258 [RefSeq]

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 265830 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/19/2023 14:36:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,139
CDSs (total)::6,017
Genes (coding)::5,675
CDSs (with protein)::5,675
Genes (RNA)::122
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::94
ncRNAs::6
Pseudo Genes (total)::342
CDSs (without protein)::342
Pseudo Genes (ambiguous residues)::0 of 342
Pseudo Genes (frameshifted)::149 of 342
Pseudo Genes (incomplete)::229 of 342
Pseudo Genes (internal stop)::71 of 342
Pseudo Genes (multiple problems)::89 of 342
Pseudo Genes (short protein)::4 of 342
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,162,737
Total ungapped length6,162,737
Total number of chromosomes and plasmids5

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003790535.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP033635.1=NZ_CP033635.1
Plasmid pTB-nb1CP033632.1=NZ_CP033632.1
Plasmid pTB-nb2CP033633.1=NZ_CP033633.1
Plasmid pTB-nb3CP033634.1=NZ_CP033634.1
Plasmid pTB-nb4CP033636.1=NZ_CP033636.1

Assembly statistics

MoleculeTotal
Length
All6,162,737
Chromosome 5,539,489
Plasmid pTB-nb1147,451
Plasmid pTB-nb2139,752
Plasmid pTB-nb382,252
Plasmid pTB-nb4253,793

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000019645.1Escherichia coli SMS-3-5claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000019645.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.6781.4896.28
Best-match type99.6781.4896.28

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna