U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM375126v1

Organism name:
Pseudokineococcus lusitanus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CECT 7306
BioSample:
SAMN10363401
BioProject:
PRJNA500287
Submitter:
DOE Joint Genome Institute
Date:
2018/11/15
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003751265.1 (latest)
RefSeq assembly accession:
GCF_003751265.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
RJKN01
Assembly method:
SPAdes v. 3.10.1
Expected final version:
no
Genome coverage:
280.0x
Sequencing technology:
Illumina HiSeq

IDs: 2087511 [UID] 7823188 [GenBank] 7891618 [RefSeq]

See Genome Information for Pseudokineococcus lusitanus

History (Show revision history)

Comment

Global statistics

Total sequence length3,839,029
Total ungapped length3,838,681
Gaps between scaffolds0
Number of scaffolds19
Scaffold N50417,836
Scaffold L504
Number of contigs21
Contig N50417,836
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)19

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,839,029193,838,681417,83620

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudokineococcus lusitanusPseudokineococcus lusitanus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_013004605.1Pseudokineococcus marinustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.8534.8337.09

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected