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ASM372209v1

Organism name:
Halosegnis longus (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: CBA1133
BioSample:
SAMN10386455
BioProject:
PRJNA503961
Submitter:
World Institute of Kimchi
Date:
2018/11/12
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from synonym type material
GenBank assembly accession:
GCA_003722095.1 (latest)
RefSeq assembly accession:
GCF_003722095.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
RJJC01
Assembly method:
PacBio SMRT Analysis v. 2.3.0
Expected final version:
yes
Genome coverage:
348.08x
Sequencing technology:
PacBio RSII

IDs: 2071631 [UID] 7782788 [GenBank] 7788518 [RefSeq]

See Genome Information for Halosegnis longus

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from Seong Woon Roh
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/07/2018 14:23:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,836
CDS (total)::2,787
Genes (coding)::2,582
CDS (coding)::2,582
Genes (RNA)::49
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::44
ncRNAs::2
Pseudo Genes (total)::205
Pseudo Genes (ambiguous residues)::0 of 205
Pseudo Genes (frameshifted)::164 of 205
Pseudo Genes (incomplete)::45 of 205
Pseudo Genes (internal stop)::7 of 205
Pseudo Genes (multiple problems)::10 of 205
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,661,022
Total ungapped length2,661,022
Number of contigs3
Contig N502,349,252
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)3

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,661,02232,661,0222,349,25200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Halosegnis longusHalosegnis longus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_009663395.1Halosegnis longustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009663395.1Halosegnis longustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3685.2981.98
Best-match type99.3685.2981.98

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna