Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM372149v1

Organism name:: Streptomyces sp. ADI95-16 (high G+C Gram-positive bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: ADI95-16
BioSample:: SAMN10372319
BioProject:: PRJNA503722
Submitter:: Bielefeld University
Date:: 2018/11/12
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_003721495.1 (latest)
RefSeq assembly accession:: GCF_003721495.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: canu v. 1.7; Newbler v. 2.8
Expected final version:: yes
Genome coverage:: 158.0x
Sequencing technology:: Illumina MiSeq; Oxford Nanopore MiniION

IDs: 2071351 [UID] 7782188 [GenBank] 7783368 [RefSeq]

See Genome Information for Streptomyces sp. ADI95-16

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003721495.1	=	GCF_003721495.1	ASM372149v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Zotchev Lab, Department of Pharmacognosy, University of Vienna
Annotated using prokka v1.11 from http://www.vicbioinformatics.com

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::07/14/2022 22:59:54
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::8,195
CDSs (total)::8,098
Genes (coding)::7,805
CDSs (with protein)::7,805
Genes (RNA)::97
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::72
ncRNAs::4
Pseudo Genes (total)::294
CDSs (without protein)::293
Pseudo Genes (ambiguous residues)::0 of 294
Pseudo Genes (frameshifted)::110 of 294
Pseudo Genes (incomplete)::233 of 294
Pseudo Genes (internal stop)::23 of 294
Pseudo Genes (multiple problems)::64 of 294
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	9,086,421
Total ungapped length	9,086,421
Total number of chromosomes and plasmids	5

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP033581.1	=	NZ_CP033581.1
Plasmid pADI95-16a	CP033582.1	=	NZ_CP033582.1
Plasmid pADI95-16b	CP033583.1	=	NZ_CP033583.1
Plasmid pADI95-16c	CP033584.1	=	NZ_CP033584.1
Plasmid pADI95-16d	CP033585.1	=	NZ_CP033585.1

Molecule	Total Length
All	9,086,421
Chromosome	8,184,000
Plasmid pADI95-16a	630,187
Plasmid pADI95-16b	254,705
Plasmid pADI95-16c	10,517
Plasmid pADI95-16d	7,012

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	97.11	79.13	85.78

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

ASM372149v1

See Genome Information for Streptomyces sp. ADI95-16

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics

Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result