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Ceug_1.0

Organism name:
Coffea eugenioides (eudicots)
Isolate:
CCC68of
Sex:
hermaphrodite
BioSample:
SAMN10269643
BioProject:
PRJNA497891
Submitter:
Johns Hopkins University
Date:
2018/11/08
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_003713205.1 (latest)
RefSeq assembly accession:
GCF_003713205.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
RHJT01
Assembly method:
MaSuRCA v. 3.2.4; FALCON-Unzip v. 0.9
Expected final version:
yes
Genome coverage:
160.0x
Sequencing technology:
Illumina HiSeq; PacBio RS; 10x Chromium

IDs: 2070231 [UID] 7777478 [GenBank] 7992058 [RefSeq]

See Genome Information for Coffea eugenioides

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length699,903,961
Total ungapped length685,333,821
Gaps between scaffolds0
Number of scaffolds3,530
Scaffold N5047,530,510
Scaffold L507
Number of contigs7,012
Contig N50204,058
Contig L50809
Total number of chromosomes and plasmids11
Number of component sequences (WGS or clone)3,530

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003713235.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM011091.1=NC_040035.10
Chromosome 2CM011092.1=NC_040036.10
Chromosome 3CM011093.1=NC_040037.10
Chromosome 4CM011094.1=NC_040038.10
Chromosome 5CM011095.1=NC_040039.10
Chromosome 6CM011096.1=NC_040040.10
Chromosome 7CM011097.1=NC_040041.10
Chromosome 8CM011098.1=NC_040042.10
Chromosome 9CM011099.1=NC_040043.10
Chromosome 10CM011100.1=NC_040044.10
Chromosome 11CM011101.1=NC_040045.10
unplacedn/an/an/a3,519

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All699,903,9613,530685,333,82147,530,5103,4820
Chromosome 153,691,034153,128,29353,691,0341860
Chromosome 279,790,123178,045,23679,790,1234300
Chromosome 348,389,548146,877,98748,389,5483430
Chromosome 443,756,297142,983,98243,756,2971990
Chromosome 552,590,270151,255,89252,590,2703340
Chromosome 656,253,515154,920,59956,253,5153330
Chromosome 740,525,418139,848,45040,525,4181900
Chromosome 847,530,510146,259,36747,530,5103140
Chromosome 942,903,947141,923,77042,903,9472590
Chromosome 1039,566,964138,783,94139,566,9642060
Chromosome 1153,112,746151,750,68653,112,7463290
unplaced141,793,5893,519139,555,61856,9653590