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ASM367532v1

Organism name:
Streptomyces dangxiongensis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Z022
BioSample:
SAMN10237529
BioProject:
PRJNA474356
Submitter:
Chinese Academy of Sciences
Date:
2018/10/23
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003675325.1 (latest)
RefSeq assembly accession:
GCF_003675325.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
FALCON v. version 0.3
Expected final version:
yes
Genome coverage:
213.0x
Sequencing technology:
Illumina and Pacpio

IDs: 2026891 [UID] 7619948 [GenBank] 7635768 [RefSeq]

See Genome Information for Streptomyces dangxiongensis

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Binglin Zhang

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/05/2022 07:44:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,188
CDSs (total)::7,098
Genes (coding)::6,531
CDSs (with protein)::6,531
Genes (RNA)::90
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::69
ncRNAs::3
Pseudo Genes (total)::567
CDSs (without protein)::567
Pseudo Genes (ambiguous residues)::0 of 567
Pseudo Genes (frameshifted)::348 of 567
Pseudo Genes (incomplete)::298 of 567
Pseudo Genes (internal stop)::26 of 567
Pseudo Genes (multiple problems)::96 of 567
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,157,885
Total ungapped length8,157,885
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003675335.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP033073.1=NZ_CP033073.1
Plasmid unnamed1CP033072.1=NZ_CP033072.1

Assembly statistics

MoleculeTotal
Length
All8,157,885
Chromosome 8,085,191
Plasmid unnamed172,694

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces dangxiongensisStreptomyces dangxiongensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002155905.1Streptomyces tricolortype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.6858.9354.46

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
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