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ASM367404v1

Organism name:
Streptomyces griseocarneus (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: 132
BioSample:
SAMN07735205
BioProject:
PRJNA416805
Submitter:
Universidade Federal de Mato Grosso
Date:
2018/10/23
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • genome length too large
GenBank assembly accession:
GCA_003674045.1 (latest)
RefSeq assembly accession:
GCF_003674045.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PENC01
Assembly method:
SPAdes v. 3.9
Expected final version:
yes
Genome coverage:
8.0x
Sequencing technology:
Illumina HiSeq

IDs: 2026251 [UID] 7618668 [GenBank] 7636468 [RefSeq]

See Genome Information for Streptomyces griseocarneus

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from not collected.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/02/2017 15:27:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,839
CDS (total)::7,740
Genes (coding)::7,477
CDS (coding)::7,477
Genes (RNA)::99
rRNAs::7, 8, 3 (5S, 16S, 23S)
complete rRNAs::7, 1, 1 (5S, 16S, 23S)
partial rRNAs::7, 2 (16S, 23S)
tRNAs::78
ncRNAs::3
Pseudo Genes (total)::263
Pseudo Genes (ambiguous residues)::0 of 263
Pseudo Genes (frameshifted)::88 of 263
Pseudo Genes (incomplete)::166 of 263
Pseudo Genes (internal stop)::50 of 263
Pseudo Genes (multiple problems)::41 of 263
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,853,664
Total ungapped length8,853,664
Number of contigs227
Contig N50329,922
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)227

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,853,6642278,853,664329,92200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces griseocarneusStreptomyces griseocarneus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_014655595.1Streptomyces griseocarneustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002286695.1Streptomyces albireticulitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type85.5132.8239.40
Best-match type86.3537.7539.53

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna