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CriGri-PICR

Organism name:
Cricetulus griseus (Chinese hamster)
Infraspecific name:
Strain: 17A/GY
Sex:
female
BioSample:
SAMN07140313
BioProject:
PRJNA389969
Submitter:
CHO Genome Community
Date:
2018/10/21
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003668045.1 (replaced)
RefSeq assembly accession:
GCF_003668045.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
RAZU01
Assembly method:
AllPaths v. 2017-05-01; HGAP v. 2017-05-01; MetaAssembler v. 2017-08-01
Expected final version:
yes
Genome coverage:
45.0x
Sequencing technology:
Illumina HiSeq; PacBio

IDs: 2027221 [UID] 7620648 [GenBank] 8069188 [RefSeq]

See Genome Information for Cricetulus griseus

Pathogen Detection Resources

There are 6 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,368,906,908
Total ungapped length2,366,055,605
Gaps between scaffolds0
Number of scaffolds1,830
Scaffold N5019,581,774
Scaffold L5033
Number of contigs4,825
Contig N502,098,530
Contig L50306
Total number of chromosomes and plasmids11
Number of component sequences (WGS or clone)1,830

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003668145.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1n/an/an/a73
Chromosome 2n/an/an/a35
Chromosome 3n/an/an/a42
Chromosome 4n/an/an/a24
Chromosome 5n/an/an/a56
Chromosome 6n/an/an/a9
Chromosome 7n/an/an/a13
Chromosome 8n/an/an/a24
Chromosome 9n/an/an/a15
Chromosome 10n/an/an/a2
Chromosome Xn/an/an/a48
unplacedn/an/an/a1,489

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule2,368,906,9081,8302,366,055,60519,581,7742,9950
Chromosome 1AllAssembled moleculeUnlocalized scaffolds549,759,1220549,759,12273073549,400,8710549,400,87124,942,521024,942,5214850485000
Chromosome 2AllAssembled moleculeUnlocalized scaffolds463,590,9850463,590,98535035463,284,1180463,284,11824,975,560024,975,5603480348000
Chromosome 3AllAssembled moleculeUnlocalized scaffolds281,862,0990281,862,09942042281,610,8850281,610,88519,241,530019,241,5302770277000
Chromosome 4AllAssembled moleculeUnlocalized scaffolds231,536,8690231,536,86924024231,300,7830231,300,78328,055,627028,055,6272590259000
Chromosome 5AllAssembled moleculeUnlocalized scaffolds188,781,1420188,781,14256056188,556,2720188,556,27223,576,174023,576,1742490249000
Chromosome 6AllAssembled moleculeUnlocalized scaffolds155,899,8620155,899,862909155,770,5280155,770,52838,072,189038,072,1891510151000
Chromosome 7AllAssembled moleculeUnlocalized scaffolds134,490,8520134,490,85213013134,341,9610134,341,96126,356,429026,356,4291720172000
Chromosome 8AllAssembled moleculeUnlocalized scaffolds96,656,214096,656,2142402496,576,290096,576,29010,167,781010,167,78192092000
Chromosome 9AllAssembled moleculeUnlocalized scaffolds18,788,670018,788,6701501518,771,573018,771,5731,817,26601,817,26628028000
Chromosome 10AllAssembled moleculeUnlocalized scaffolds32,578,934032,578,93420232,561,319032,561,31917,833,227017,833,22728028000
Chromosome XAllAssembled moleculeUnlocalized scaffolds134,882,0390134,882,03948048134,787,7080134,787,70811,201,266011,201,26699099000
unplacedAssembled molecule80,080,1201,48979,093,29770,7768070