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ASM359554v1

Organism name:
Streptomyces sp. 11-1-2 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: 11-1-2
BioSample:
SAMN07342914
BioProject:
PRJNA393858
Submitter:
Memorial University of Newfoundland
Date:
2017/08/02
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003595545.1 (latest)
RefSeq assembly accession:
GCF_003595545.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Hierarchical Genome Assembly Process (HGAP) v. July-2016
Expected final version:
yes
Genome coverage:
230.0x
Sequencing technology:
PacBio

IDs: 1993071 [UID] 7497788 [GenBank] 7526728 [RefSeq]

See Genome Information for Streptomyces sp. 11-1-2

History (Show revision history)

Comment

Bacteria and source DNA available from Dawn Bignell, Department of Biology, Memorial University of Newfoundland.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/05/2022 05:09:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::9,911
CDSs (total)::9,824
Genes (coding)::9,300
CDSs (with protein)::9,300
Genes (RNA)::87
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::66
ncRNAs::3
Pseudo Genes (total)::524
CDSs (without protein)::524
Pseudo Genes (ambiguous residues)::0 of 524
Pseudo Genes (frameshifted)::206 of 524
Pseudo Genes (incomplete)::388 of 524
Pseudo Genes (internal stop)::27 of 524
Pseudo Genes (multiple problems)::90 of 524
CRISPR Arrays::4
##Genome-Annotation-Data-END##

Global statistics

Total sequence length11,655,206
Total ungapped length11,655,206
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003595555.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP022545.1=NZ_CP022545.1
Plasmid unnamed1CP022546.1=NZ_CP022546.1

Assembly statistics

MoleculeTotal
Length
All11,655,206
Chromosome 11,603,877
Plasmid unnamed151,329

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. 11-1-2Streptomyces sp. 11-1-2

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_005405925.1Streptomyces antimycoticustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.5174.1977.38

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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