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Source database (GenBank or RefSeq) File type

ASM345475v1

Organism name:: Streptomyces clavuligerus (high G+C Gram-positive bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: F1D-5
BioSample:: SAMN09930682
BioProject:: PRJNA488350
Submitter:: Shandong Academy of Medical Sciences
Date:: 2018/09/05
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_003454755.1 (latest)
RefSeq assembly accession:: GCF_003454755.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: SOAPdenovo v. MAY-2018
Expected final version:: yes
Genome coverage:: 320.0x
Sequencing technology:: PacBio RSII; Illumina HiSeq

IDs: 1917781 [UID] 7281368 [GenBank] 7353378 [RefSeq]

See Genome Information for Streptomyces clavuligerus

Pathogen Detection Resources

There are 31 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003454755.1	=	GCF_003454755.1	ASM345475v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Bacteria and source DNA available from Dr Guangxiang Cao.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::03/19/2023 05:56:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,666
CDSs (total)::6,580
Genes (coding)::6,374
CDSs (with protein)::6,374
Genes (RNA)::86
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::65
ncRNAs::3
Pseudo Genes (total)::206
CDSs (without protein)::206
Pseudo Genes (ambiguous residues)::0 of 206
Pseudo Genes (frameshifted)::90 of 206
Pseudo Genes (incomplete)::140 of 206
Pseudo Genes (internal stop)::11 of 206
Pseudo Genes (multiple problems)::33 of 206
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	8,059,125
Total ungapped length	8,059,125
Total number of chromosomes and plasmids	3

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP032052.1	=	NZ_CP032052.1
Plasmid pSCL1	CP032054.1	=	NZ_CP032054.1
Plasmid pSCL2	CP032053.1	=	NZ_CP032053.1

Molecule	Total Length
All	8,059,125
Chromosome	6,900,908
Plasmid pSCL1	1,051,520
Plasmid pSCL2	106,697

	ANI	Query coverage	Subject coverage
Declared type	99.95	93.84	82.55
Best-match type	99.95	93.84	82.55

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ASM345475v1

See Genome Information for Streptomyces clavuligerus

Pathogen Detection Resources

There are 31 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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