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ASM344373v1

Organism name:
Streptomyces sp. CC0208 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: CC0208
BioSample:
SAMN09925543
BioProject:
PRJNA488148
Submitter:
Tianjin University of Commerce
Date:
2018/09/04
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003443735.1 (latest)
RefSeq assembly accession:
GCF_003443735.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT Link v. 5.1.0
Expected final version:
yes
Genome coverage:
111.0x
Sequencing technology:
PacBio; Illumina HiSeq

IDs: 1912271 [UID] 7269598 [GenBank] 7352258 [RefSeq]

See Genome Information for Streptomyces sp. CC0208

History (Show revision history)

Comment

Bacteria and source DNA available from Hongyu Zhang.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/05/2022 03:23:38
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::8,486
CDSs (total)::8,397
Genes (coding)::8,089
CDSs (with protein)::8,089
Genes (RNA)::89
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::68
ncRNAs::3
Pseudo Genes (total)::308
CDSs (without protein)::308
Pseudo Genes (ambiguous residues)::0 of 308
Pseudo Genes (frameshifted)::131 of 308
Pseudo Genes (incomplete)::261 of 308
Pseudo Genes (internal stop)::21 of 308
Pseudo Genes (multiple problems)::97 of 308
##Genome-Annotation-Data-END##

Global statistics

Total sequence length9,320,089
Total ungapped length9,320,089
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003443745.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP031969.1=NZ_CP031969.1

Assembly statistics

MoleculeTotal
Length
Chromosome 9,320,089

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. CC0208Streptomyces sp. CC0208

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001513955.1Streptomyces pseudovenezuelaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.6678.2075.81

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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