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ASM340305v1

Organism name:
Streptomyces sp. AcE210 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AcE210
BioSample:
SAMN09765673
BioProject:
PRJNA484515
Submitter:
University of Tuebingen
Date:
2018/08/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003403055.1 (latest)
RefSeq assembly accession:
GCF_003403055.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QURC01
Assembly method:
FALCON v. NOV-2017
Expected final version:
yes
Genome coverage:
127.0x
Sequencing technology:
PacBio RSII

IDs: 1875661 [UID] 7103158 [GenBank] 7125278 [RefSeq]

See Genome Information for Streptomyces sp. AcE210

History (Show revision history)

Comment

Bacteria and source DNA available from Timo Niedermeyer, Institute of Pharmaceutical Sciences, University of Halle, Hoher Weg 8, 06120 Halle (Saale), Germany.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be ... found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/13/2018 17:48:18
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::9,653
CDS (total)::9,558
Genes (coding)::8,873
CDS (coding)::8,873
Genes (RNA)::95
rRNAs::8, 7, 8 (5S, 16S, 23S)
complete rRNAs::8, 7, 6 (5S, 16S, 23S)
partial rRNAs::2 (23S)
tRNAs::69
ncRNAs::3
Pseudo Genes (total)::685
Pseudo Genes (ambiguous residues)::0 of 685
Pseudo Genes (frameshifted)::349 of 685
Pseudo Genes (incomplete)::422 of 685
Pseudo Genes (internal stop)::65 of 685
Pseudo Genes (multiple problems)::141 of 685
##Genome-Annotation-Data-END##

Global statistics

Total sequence length10,567,477
Total ungapped length10,567,477
Number of contigs4
Contig N506,396,991
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)4

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced10,567,477410,567,4776,396,99100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. AcE210Streptomyces sp. AcE210

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001419745.1Streptomyces silaceustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.0130.2436.56

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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