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ASM339113v1

Organism name:
Streptomyces olivoreticuli subsp. olivoreticuli (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: ATCC 31159
BioSample:
SAMN09769444
BioProject:
PRJNA484511
Submitter:
Tianjin University of Commerce
Date:
2018/08/14
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_003391135.1 (latest)
RefSeq assembly accession:
GCF_003391135.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT Link v. 5.1.0
Expected final version:
yes
Reference guided assembly:
SMRT Link v5.1.0
Genome coverage:
145.0x
Sequencing technology:
Illumina HiSeq; PacBio

IDs: 1865851 [UID] 7081918 [GenBank] 7098308 [RefSeq]

See Genome Information for Streptomyces olivoreticuli

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from Hongyu Zhang.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/19/2023 03:35:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::7,560
CDSs (total)::7,457
Genes (coding)::7,261
CDSs (with protein)::7,261
Genes (RNA)::103
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::79
ncRNAs::3
Pseudo Genes (total)::196
CDSs (without protein)::196
Pseudo Genes (ambiguous residues)::0 of 196
Pseudo Genes (frameshifted)::66 of 196
Pseudo Genes (incomplete)::158 of 196
Pseudo Genes (internal stop)::18 of 196
Pseudo Genes (multiple problems)::41 of 196
CRISPR Arrays::5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,809,793
Total ungapped length8,809,793
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003391145.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP031455.1=NZ_CP031455.1

Assembly statistics

MoleculeTotal
Length
Chromosome 8,809,793

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces olivoreticuli subsp. olivoreticuliStreptomyces olivoreticuli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002286695.1Streptomyces albireticulitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.1644.0345.88

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna