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ASM339113v1

Organism name:
Streptomyces olivoreticuli subsp. olivoreticuli (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: ATCC 31159
BioSample:
SAMN09769444
BioProject:
PRJNA484511
Submitter:
Tianjin University of Commerce
Date:
2018/08/14
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_003391135.1 (latest)
RefSeq assembly accession:
GCF_003391135.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT Link v. 5.1.0
Expected final version:
yes
Reference guided assembly:
SMRT Link v5.1.0
Genome coverage:
145.0x
Sequencing technology:
Illumina HiSeq; PacBio

IDs: 1865851 [UID] 7081918 [GenBank] 7098308 [RefSeq]

See Genome Information for Streptomyces olivoreticuli

History (Show revision history)

Comment

Bacteria and source DNA available from Hongyu Zhang.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/04/2022 06:05:42
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,558
CDSs (total)::7,455
Genes (coding)::7,233
CDSs (with protein)::7,233
Genes (RNA)::103
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::79
ncRNAs::3
Pseudo Genes (total)::222
CDSs (without protein)::222
Pseudo Genes (ambiguous residues)::0 of 222
Pseudo Genes (frameshifted)::70 of 222
Pseudo Genes (incomplete)::184 of 222
Pseudo Genes (internal stop)::20 of 222
Pseudo Genes (multiple problems)::46 of 222
CRISPR Arrays::5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,809,793
Total ungapped length8,809,793
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003391145.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP031455.1=NZ_CP031455.1

Assembly statistics

MoleculeTotal
Length
Chromosome 8,809,793

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces olivoreticuli subsp. olivoreticuliStreptomyces olivoreticuli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002286695.1Streptomyces albireticulitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.1744.0345.88

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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