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ASM336979v1

Organism name:
Streptomyces sp. CB09001 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: CB09001
BioSample:
SAMN08474659
BioProject:
PRJNA433315
Submitter:
Central South University
Date:
2018/08/10
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003369795.1 (latest)
RefSeq assembly accession:
GCF_003369795.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Celera Assembler v. 8.1
Expected final version:
no
Genome coverage:
12.0x
Sequencing technology:
PacBio; Illumina MiSeq

IDs: 1861281 [UID] 7057418 [GenBank] 7077058 [RefSeq]

See Genome Information for Streptomyces sp. CB09001

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/04/2022 04:51:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,043
CDSs (total)::6,956
Genes (coding)::6,780
CDSs (with protein)::6,780
Genes (RNA)::87
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::66
ncRNAs::3
Pseudo Genes (total)::176
CDSs (without protein)::176
Pseudo Genes (ambiguous residues)::0 of 176
Pseudo Genes (frameshifted)::70 of 176
Pseudo Genes (incomplete)::138 of 176
Pseudo Genes (internal stop)::12 of 176
Pseudo Genes (multiple problems)::40 of 176
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,787,608
Total ungapped length7,787,608
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003369805.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP026730.1=NZ_CP026730.1

Assembly statistics

MoleculeTotal
Length
Chromosome 7,787,608

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. CB09001Streptomyces sp. CB09001

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003112595.1Streptomyces rubrogriseustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.0980.3374.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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