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ASM336764v1

Organism name:
Streptomyces sp. IB2014 011-12 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: IB2014 011-12
BioSample:
SAMN08995759
BioProject:
PRJNA453997
Submitter:
Saarland University
Date:
2018/08/08
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003367645.1 (latest)
RefSeq assembly accession:
GCF_003367645.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QEIK01
Assembly method:
SPAdes v. 3.8.1
Expected final version:
yes
Genome coverage:
37.0x
Sequencing technology:
Illumina MiSeq

IDs: 1857411 [UID] 7040038 [GenBank] 7056408 [RefSeq]

See Genome Information for Streptomyces sp. IB2014 011-12

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/01/2018 10:00:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,413
CDS (total)::7,336
Genes (coding)::7,082
CDS (coding)::7,082
Genes (RNA)::77
rRNAs::3, 1, 3 (5S, 16S, 23S)
complete rRNAs::3, 1 (5S, 16S)
partial rRNAs::3 (23S)
tRNAs::67
ncRNAs::3
Pseudo Genes (total)::254
Pseudo Genes (ambiguous residues)::0 of 254
Pseudo Genes (frameshifted)::112 of 254
Pseudo Genes (incomplete)::160 of 254
Pseudo Genes (internal stop)::37 of 254
Pseudo Genes (multiple problems)::46 of 254
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,153,082
Total ungapped length8,153,082
Number of contigs58
Contig N50374,019
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)58

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,153,082588,153,082374,01900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. IB2014 011-12Streptomyces sp. IB2014 011-12

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000718135.1Streptomyces cyaneofuscatustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.5090.4393.34

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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