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ASM336319v1

Organism name:
Streptomyces sp. M7 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: M7
BioSample:
SAMN09724918
BioProject:
PRJNA483054
Submitter:
PROIMI
Date:
2018/08/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003363195.1 (latest)
RefSeq assembly accession:
GCF_003363195.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRAK01
Assembly method:
RAST v. 2.0
Expected final version:
no
Genome coverage:
95.0x
Sequencing technology:
Illumina HiSeq

IDs: 1855441 [UID] 7016938 [GenBank] 7045898 [RefSeq]

See Genome Information for Streptomyces sp. M7

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/30/2018 14:43:36
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,152
CDS (total)::7,060
Genes (coding)::6,867
CDS (coding)::6,867
Genes (RNA)::92
rRNAs::6, 5, 9 (5S, 16S, 23S)
complete rRNAs::6, 5, 2 (5S, 16S, 23S)
partial rRNAs::7 (23S)
tRNAs::69
ncRNAs::3
Pseudo Genes (total)::193
Pseudo Genes (ambiguous residues)::0 of 193
Pseudo Genes (frameshifted)::85 of 193
Pseudo Genes (incomplete)::131 of 193
Pseudo Genes (internal stop)::16 of 193
Pseudo Genes (multiple problems)::36 of 193
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,774,362
Total ungapped length7,774,362
Number of contigs24
Contig N50503,737
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)24

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,774,362247,774,362503,73700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. M7Streptomyces sp. M7

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003074055.1Streptomyces nigratype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.2490.2691.83

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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