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ASM334651v1

Organism name:
Streptomyces corynorhini (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AC230
BioSample:
SAMN09709326
BioProject:
PRJNA481970
Submitter:
NCAUR-ARS-USDA
Date:
2018/07/30
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003346515.1 (latest)
RefSeq assembly accession:
GCF_003346515.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QQNA01
Assembly method:
clcbio v. 11
Expected final version:
yes
Genome coverage:
300.0x
Sequencing technology:
Illumina MiSeq

IDs: 1836751 [UID] 6961988 [GenBank] 6969148 [RefSeq]

See Genome Information for Streptomyces corynorhini

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/25/2018 16:48:26
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,932
CDS (total)::6,860
Genes (coding)::6,446
CDS (coding)::6,446
Genes (RNA)::72
rRNAs::5, 1, 2 (5S, 16S, 23S)
complete rRNAs::4, 1, 1 (5S, 16S, 23S)
partial rRNAs::1, 1 (5S, 23S)
tRNAs::62
ncRNAs::2
Pseudo Genes (total)::414
Pseudo Genes (ambiguous residues)::8 of 414
Pseudo Genes (frameshifted)::86 of 414
Pseudo Genes (incomplete)::342 of 414
Pseudo Genes (internal stop)::22 of 414
Pseudo Genes (multiple problems)::41 of 414
CRISPR Arrays::6
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,735,729
Total ungapped length7,733,261
Gaps between scaffolds0
Number of scaffolds480
Scaffold N5028,347
Scaffold L5080
Number of contigs507
Contig N5027,620
Contig L5081
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)480

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,735,7294807,733,26128,347270

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces corynorhiniStreptomyces corynorhini

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003344965.1Streptomyces paludistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.2752.1347.68

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
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