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ASM334496v1

Organism name:
Streptomyces paludis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: GSSD-12
BioSample:
SAMN09699158
BioProject:
PRJNA482168
Submitter:
Hunan University of Science and Technology
Date:
2018/07/30
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003344965.1 (latest)
RefSeq assembly accession:
GCF_003344965.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 2.3
Expected final version:
no
Genome coverage:
120.0x
Sequencing technology:
PacBio

IDs: 1835551 [UID] 6959478 [GenBank] 6970028 [RefSeq]

See Genome Information for Streptomyces paludis

History (Show revision history)

Comment

Bacteria and source DNA available from JianGao.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/12/2021 14:59:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,168
CDSs (total)::7,080
Genes (coding)::6,929
CDSs (with protein)::6,929
Genes (RNA)::88
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::67
ncRNAs::3
Pseudo Genes (total)::151
CDSs (without protein)::151
Pseudo Genes (ambiguous residues)::0 of 151
Pseudo Genes (frameshifted)::37 of 151
Pseudo Genes (incomplete)::128 of 151
Pseudo Genes (internal stop)::12 of 151
Pseudo Genes (multiple problems)::24 of 151
CRISPR Arrays::5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,454,852
Total ungapped length8,454,852
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003344975.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP031194.1=NZ_CP031194.1

Assembly statistics

MoleculeTotal
Length
Chromosome 8,454,852

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces paludisStreptomyces paludis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003346515.1Streptomyces corynorhinitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.2747.6852.13

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
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