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ASM333084v1

Organism name:
Streptomyces sp. Go-475 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: Go-475
BioSample:
SAMN08364892
BioProject:
PRJNA430025
Submitter:
Bielefeld University
Date:
2018/07/20
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003330845.1 (latest)
RefSeq assembly accession:
GCF_003330845.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.8; canu v. 1.6
Genome coverage:
76.4x
Sequencing technology:
Illumina; Oxford Nanopore

IDs: 1825951 [UID] 6922158 [GenBank] 6940138 [RefSeq]

See Genome Information for Streptomyces sp. Go-475

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Zotchev Lab, University of Vienna.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/01/2023 04:52:27
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::7,715
CDSs (total)::7,626
Genes (coding)::7,413
CDSs (with protein)::7,413
Genes (RNA)::89
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::68
ncRNAs::3
Pseudo Genes (total)::213
CDSs (without protein)::213
Pseudo Genes (ambiguous residues)::0 of 213
Pseudo Genes (frameshifted)::104 of 213
Pseudo Genes (incomplete)::148 of 213
Pseudo Genes (internal stop)::17 of 213
Pseudo Genes (multiple problems)::52 of 213
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,570,609
Total ungapped length8,570,609
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003330855.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP026121.1=NZ_CP026121.1

Assembly statistics

MoleculeTotal
Length
Chromosome 8,570,609

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. Go-475Streptomyces sp. Go-475

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014651035.1Streptomyces lomondensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.3778.8576.94

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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