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PumCon1.0

Organism name:
Puma concolor (puma)
Isolate:
SC36_Marlon
Sex:
male
BioSample:
SAMN08662999
BioProject:
PRJNA437459
Submitter:
Broad Institute
Date:
2018/07/19
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_003327715.1 (latest)
RefSeq assembly accession:
GCF_003327715.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
QAVW01
Assembly method:
Meraculous v. Jan-31-2018; HiRise v. Jan-31-2018; PBJelly v. Jan-31-2018; Pilon v. Jan-31-2018
Expected final version:
yes
Genome coverage:
47.0x
Sequencing technology:
Illumina; Oxford Nanopore

IDs: 1824681 [UID] 6917658 [GenBank] 6918498 [RefSeq]

See Genome Information for Puma concolor

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,432,966,684
Total ungapped length2,318,896,747
Gaps between scaffolds0
Number of scaffolds2,175
Scaffold N50100,532,876
Scaffold L508
Number of contigs181,166
Contig N5027,187
Contig L5024,311
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)2,175

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,432,949,5312,1742,318,879,594100,532,876178,9910
MoleculeTotal
Length
Mitochondrion MT17,153
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