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ASM326896v1

Organism name:
Streptomyces avidinii (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: CG 885
BioSample:
SAMN05421859
BioProject:
PRJNA330489
Submitter:
DOE Joint Genome Institute
Date:
2018/06/27
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003268965.1 (latest)
RefSeq assembly accession:
GCF_003268965.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QLTM01
Assembly method:
AllPaths v. r46652
Expected final version:
no
Genome coverage:
204.0x
Sequencing technology:
Illumina MiSeq

IDs: 1775691 [UID] 6731328 [GenBank] 6854518 [RefSeq]

See Genome Information for Streptomyces avidinii

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length7,653,760
Total ungapped length7,653,175
Gaps between scaffolds0
Number of scaffolds44
Scaffold N50630,656
Scaffold L505
Number of contigs45
Contig N50588,328
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)44

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,653,760447,653,175630,65610

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces avidiniiStreptomyces avidinii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_014650695.1Streptomyces avidiniitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000717245.1[Kitasatospora] papulosatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type83.8619.5317.92
Best-match type99.3292.2193.24

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchbest matching type is part of Streptomyces; we treat this group as inconclusive
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