U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Try the new Datasets Genome page

ASM326855v1

Organism name:
Streptomyces sp. ST1020 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: ST1020
BioSample:
SAMN04977949
BioProject:
PRJNA321203
Submitter:
Facultad de Quimica-Universidad de la Republica
Date:
2018/06/27
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003268555.1 (latest)
RefSeq assembly accession:
GCF_003268555.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LXWD01
Assembly method:
SPAdes v. 3.1
Expected final version:
no
Genome coverage:
30.0x
Sequencing technology:
Illumina GAIIx

IDs: 1775461 [UID] 6730868 [GenBank] 6854098 [RefSeq]

See Genome Information for Streptomyces sp. ST1020

History (Show revision history)

Comment

Global statistics

Total sequence length9,893,137
Total ungapped length9,893,137
Number of contigs1,013
Contig N5017,536
Contig L50173
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1,013

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced9,893,1371,0139,893,13717,53600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. ST1020Streptomyces sp. ST1020

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014489635.1Streptomyces roseirectustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.0863.8963.54

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
Support Center