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ASM326388v1

Organism name:
Streptomyces badius (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: SF7B6
BioSample:
SAMN04589202
BioProject:
PRJNA316661
Submitter:
Gyeongsang national university
Date:
2018/06/25
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003263885.1 (latest)
RefSeq assembly accession:
GCF_003263885.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LWMP01
Assembly method:
HGAP protocol 2 v. SMRT analysis 2.3
Expected final version:
yes
Genome coverage:
86.04x
Sequencing technology:
PacBio

IDs: 1773891 [UID] 6721578 [GenBank] 6853878 [RefSeq]

See Genome Information for Streptomyces badius

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/22/2016 14:01:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,751
CDS (total)::6,663
Genes (coding)::6,325
CDS (coding)::6,325
Genes (RNA)::88
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::67
ncRNAs::3
Pseudo Genes (total)::338
Pseudo Genes (ambiguous residues)::0 of 338
Pseudo Genes (frameshifted)::264 of 338
Pseudo Genes (incomplete)::89 of 338
Pseudo Genes (internal stop)::13 of 338
Pseudo Genes (multiple problems)::27 of 338
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,682,334
Total ungapped length7,682,334
Number of contigs3
Contig N507,496,621
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)3

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,682,33437,682,3347,496,62100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces badiusStreptomyces badius

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_014649415.1Streptomyces badiustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002154385.1Streptomyces albovinaceustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type93.9876.5878.60
Best-match type99.4385.1590.42

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchbest matching type is part of Streptomyces; we treat this group as inconclusive
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