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ASM326105v1

Organism name:
Streptomyces cadmiisoli (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: ZFG47
BioSample:
SAMN09388963
BioProject:
PRJNA475413
Submitter:
Hunan university of science and technology
Date:
2018/06/24
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003261055.1 (latest)
RefSeq assembly accession:
GCF_003261055.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 1.3
Expected final version:
no
Genome coverage:
120.0x
Sequencing technology:
PacBio

IDs: 1772471 [UID] 6718698 [GenBank] 6853458 [RefSeq]

See Genome Information for Streptomyces cadmiisoli

History (Show revision history)

Comment

Bacteria and source DNA available from Gao Jian.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/19/2022 07:27:39
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::8,882
CDSs (total)::8,789
Genes (coding)::8,499
CDSs (with protein)::8,499
Genes (RNA)::93
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::72
ncRNAs::3
Pseudo Genes (total)::291
CDSs (without protein)::290
Pseudo Genes (ambiguous residues)::0 of 291
Pseudo Genes (frameshifted)::115 of 291
Pseudo Genes (incomplete)::237 of 291
Pseudo Genes (internal stop)::30 of 291
Pseudo Genes (multiple problems)::78 of 291
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length10,239,272
Total ungapped length10,239,272
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003261065.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP030073.1=NZ_CP030073.1
Plasmid unnamed1CP030074.1=NZ_CP030074.1

Assembly statistics

MoleculeTotal
Length
All10,239,272
Chromosome 9,269,371
Plasmid unnamed1969,901

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces cadmiisoliStreptomyces cadmiisoli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_013433285.1Streptomyces gossypiisolitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.5143.5947.87

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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