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ASM325993v1

Organism name:
Anoxybacillus vitaminiphilus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: CGMCC 1.8979
BioSample:
SAMN06296536
BioProject:
PRJNA370109
Submitter:
DOE Joint Genome Institute
Date:
2018/06/21
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003259935.1 (latest)
RefSeq assembly accession:
GCF_003259935.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QLMH01
Assembly method:
SPAdes v. 3.9.0
Expected final version:
no
Genome coverage:
220.0x
Sequencing technology:
Illumina HiSeq

IDs: 1769861 [UID] 6706288 [GenBank] 6718278 [RefSeq]

See Genome Information for Anoxybacillus vitaminiphilus

History (Show revision history)

Comment

Global statistics

Total sequence length3,556,270
Total ungapped length3,555,034
Gaps between scaffolds0
Number of scaffolds58
Scaffold N50192,539
Scaffold L506
Number of contigs60
Contig N50160,512
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)58

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,556,270583,555,034192,53920

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Anoxybacillus vitaminiphilusAnoxybacillus vitaminiphilus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_013760845.1Anoxybacillus calidustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.2059.9662.60

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected