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ASM320523v1

Organism name:
Thermoplasma sp. Kam2015 (archaea)
Taxonomy check:
OK
Infraspecific name:
Strain: Kam2015
BioSample:
SAMN09280936
BioProject:
PRJNA473658
Submitter:
IKBFU
Date:
2018/06/10
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003205235.1 (latest)
RefSeq assembly accession:
GCF_003205235.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QJSM01
Assembly method:
SPAdes v. 3.8
Expected final version:
no
Genome coverage:
148.0x
Sequencing technology:
Illumina MiSeq

IDs: 1741461 [UID] 6625598 [GenBank] 6661138 [RefSeq]

See Genome Information for Thermoplasma sp. Kam2015

History (Show revision history)

Comment

Bacteria and source DNA available from Research Center of Biotechnology Russian Academy of Sciences.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/05/2018 18:19:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,844
CDS (total)::1,794
Genes (coding)::1,765
CDS (coding)::1,765
Genes (RNA)::50
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::45
ncRNAs::2
Pseudo Genes (total)::29
Pseudo Genes (ambiguous residues)::0 of 29
Pseudo Genes (frameshifted)::11 of 29
Pseudo Genes (incomplete)::14 of 29
Pseudo Genes (internal stop)::8 of 29
Pseudo Genes (multiple problems)::4 of 29
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,790,060
Total ungapped length1,790,060
Number of contigs63
Contig N5080,169
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)63

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,790,060631,790,06080,16900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thermoplasma sp. Kam2015Thermoplasma sp. Kam2015

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000195915.1Thermoplasma acidophilumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type79.7721.2124.26

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna