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ASM317327v1

Organism name:
Streptomyces sp. NEAU-S7GS2 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NEAU-S7GS2
BioSample:
SAMN09217500
BioProject:
PRJNA471769
Submitter:
Northeast Agricultural University
Date:
2018/05/28
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003173275.1 (latest)
RefSeq assembly accession:
GCF_003173275.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
AMRT Link v. v5.0.1
Expected final version:
yes
Genome coverage:
64.0x
Sequencing technology:
PacBio

IDs: 1729151 [UID] 6568498 [GenBank] 6578328 [RefSeq]

See Genome Information for Streptomyces sp. NEAU-S7GS2

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/22/2022 04:03:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::8,443
CDSs (total)::8,350
Genes (coding)::7,984
CDSs (with protein)::7,984
Genes (RNA)::93
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::69
ncRNAs::3
Pseudo Genes (total)::366
CDSs (without protein)::366
Pseudo Genes (ambiguous residues)::0 of 366
Pseudo Genes (frameshifted)::165 of 366
Pseudo Genes (incomplete)::275 of 366
Pseudo Genes (internal stop)::20 of 366
Pseudo Genes (multiple problems)::87 of 366
##Genome-Annotation-Data-END##

Global statistics

Total sequence length9,687,439
Total ungapped length9,687,439
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003173285.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP029541.1=NZ_CP029541.1
Plasmid unnamed1CP029542.1=NZ_CP029542.1

Assembly statistics

MoleculeTotal
Length
All9,687,439
Chromosome 9,641,634
Plasmid unnamed145,805

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. NEAU-S7GS2Streptomyces sp. NEAU-S7GS2

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014649275.1Streptomyces libanitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.2986.9492.31

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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