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ASM311679v1

Organism name:
Streptomyces sp. CS207 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CS207
BioSample:
SAMN08896841
BioProject:
PRJNA449330
Submitter:
Universidad de Oviedo
Date:
2018/04/26
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003116795.1 (latest)
RefSeq assembly accession:
GCF_003116795.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QBIB01
Assembly method:
Newbler v. 2.9
Expected final version:
yes
Genome coverage:
177.89x
Sequencing technology:
Illumina MiSeq

IDs: 1695321 [UID] 6480508 [GenBank] 6529508 [RefSeq]

See Genome Information for Streptomyces sp. CS207

History (Show revision history)

Comment

Bacteria and source DNA available from Professor JA Salas laboratory.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/14/2018 00:06:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,010
CDS (total)::5,937
Genes (coding)::5,774
CDS (coding)::5,774
Genes (RNA)::73
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::61
ncRNAs::3
Pseudo Genes (total)::163
Pseudo Genes (ambiguous residues)::0 of 163
Pseudo Genes (frameshifted)::76 of 163
Pseudo Genes (incomplete)::113 of 163
Pseudo Genes (internal stop)::16 of 163
Pseudo Genes (multiple problems)::37 of 163
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,664,327
Total ungapped length6,656,369
Gaps between scaffolds0
Number of scaffolds4
Scaffold N504,214,913
Scaffold L501
Number of contigs22
Contig N50532,902
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)22

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,664,32746,656,3694,214,913180

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. CS207Streptomyces sp. CS207

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014650215.1Streptomyces vinaceusdrappussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.1196.2075.68

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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