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ASM311672v1

Organism name:
Streptomyces sp. CS065A (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: CS065A
BioSample:
SAMN08895617
BioProject:
PRJNA449323
Submitter:
Universidad de Oviedo
Date:
2018/04/26
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003116725.1 (latest)
RefSeq assembly accession:
GCF_003116725.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QBHW01
Assembly method:
Newbler v. 2.9
Expected final version:
yes
Genome coverage:
540.60x
Sequencing technology:
Illumina MiSeq

IDs: 1695461 [UID] 6480768 [GenBank] 6527008 [RefSeq]

See Genome Information for Streptomyces sp. CS065A

History (Show revision history)

Comment

Bacteria and source DNA available from Professor JA Salas laboratory.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/14/2018 01:41:02
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,428
CDS (total)::6,358
Genes (coding)::6,016
CDS (coding)::6,016
Genes (RNA)::70
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::58
ncRNAs::3
Pseudo Genes (total)::342
Pseudo Genes (ambiguous residues)::0 of 342
Pseudo Genes (frameshifted)::158 of 342
Pseudo Genes (incomplete)::247 of 342
Pseudo Genes (internal stop)::38 of 342
Pseudo Genes (multiple problems)::94 of 342
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,190,709
Total ungapped length7,180,225
Gaps between scaffolds0
Number of scaffolds2
Scaffold N506,921,137
Scaffold L501
Number of contigs34
Contig N50377,645
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)34

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,190,70927,180,2256,921,137320

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. CS065AStreptomyces sp. CS065A

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_008932075.1Streptomyces arboristype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.2679.9969.23

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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