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ASM311257v1

Organism name:
Streptomyces ardesiacus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NBRC 15402
BioSample:
SAMD00090289
BioProject:
PRJDB6184
Submitter:
National Institute of Technology and Evaluation Biological Resource Center
Date:
2018/03/30
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003112575.1 (latest)
RefSeq assembly accession:
GCF_003112575.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BEWC01
Assembly method:
newbler v. 3.0
Genome coverage:
128x
Sequencing technology:
Illumina MiSeq

IDs: 1693391 [UID] 6475858 [GenBank] 6487158 [RefSeq]

See Genome Information for Streptomyces ardesiacus

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment



Strain NBRC 15402 available from NBRC culture collection (http://www.nite.go.jp/en/nbrc/index.html).

The NBRC Whole Genome Shotgun Project aims to provide "reference genomes" of NBRC culture collection strains for identifying useful genes for taxonomic classification, risk/safety assessment, and industrial application, and for understanding ... the structure and evolution of microbial genomes.
(http://www.nite.go.jp/en/nbrc/genome/project/wgs/ project_wgs2.html)  more

Global statistics

Total sequence length7,851,547
Total ungapped length7,851,547
Number of contigs32
Contig N50752,736
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)32

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced7,851,547327,851,547752,73600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces ardesiacusStreptomyces ardesiacus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014280945.1Streptomyces salinariustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.6374.8869.73

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected