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ASM311253v1

Organism name:
Streptomyces rishiriensis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NBRC 13407
BioSample:
SAMD00090287
BioProject:
PRJDB6182
Submitter:
National Institute of Technology and Evaluation Biological Resource Center
Date:
2018/03/30
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003112535.1 (latest)
RefSeq assembly accession:
GCF_003112535.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BEWA01
Assembly method:
newbler v. 3.0
Genome coverage:
133x
Sequencing technology:
Illumina MiSeq

IDs: 1693371 [UID] 6475818 [GenBank] 6488338 [RefSeq]

See Genome Information for Streptomyces rishiriensis

History (Show revision history)

Comment



Strain NBRC 13407 available from NBRC culture collection (http://www.nite.go.jp/en/nbrc/index.html).

The NBRC Whole Genome Shotgun Project aims to provide reference genomes of NBRC culture collection strains for identifying useful genes for taxonomic classification, risk/safety assessment, and industrial application, and for understanding ... the structure and evolution of microbial genomes.
(http://www.nite.go.jp/en/nbrc/genome/project/wgs/ project_wgs2.html)  more

Global statistics

Total sequence length9,179,716
Total ungapped length9,179,400
Gaps between scaffolds0
Number of scaffolds76
Scaffold N50343,791
Scaffold L5010
Number of contigs79
Contig N50327,727
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)76

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced9,179,716769,179,400343,79130

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces rishiriensisStreptomyces rishiriensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014649655.1Streptomyces humidustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.9866.4962.85

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
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