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ASM303247v1

Organism name:
Streptomyces sp. P3 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: P3
BioSample:
SAMN08660902
BioProject:
PRJNA437360
Submitter:
Rural Development Administration
Date:
2018/04/04
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003032475.1 (latest)
RefSeq assembly accession:
GCF_003032475.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
other v. FEB-2018
Expected final version:
yes
Genome coverage:
98.2x
Sequencing technology:
PacBio

IDs: 1657891 [UID] 6318648 [GenBank] 6371488 [RefSeq]

See Genome Information for Streptomyces sp. P3

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from Min kyu Kang and Duck hwan Park.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::07/11/2022 07:26:53
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::8,660
CDSs (total)::8,571
Genes (coding)::8,185
CDSs (with protein)::8,185
Genes (RNA)::89
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::68
ncRNAs::3
Pseudo Genes (total)::387
CDSs (without protein)::386
Pseudo Genes (ambiguous residues)::0 of 387
Pseudo Genes (frameshifted)::127 of 387
Pseudo Genes (incomplete)::330 of 387
Pseudo Genes (internal stop)::34 of 387
Pseudo Genes (multiple problems)::98 of 387
##Genome-Annotation-Data-END##

Global statistics

Total sequence length9,851,971
Total ungapped length9,851,971
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003032485.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP028369.1=NZ_CP028369.1

Assembly statistics

MoleculeTotal
Length
Chromosome 9,851,971

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. P3Streptomyces sp. P3

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003112535.1Streptomyces rishiriensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.1653.4457.36

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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