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ASM298419v1

Organism name:
Providencia rettgeri (enterobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: FDAARGOS_330
BioSample:
SAMN06173343
BioProject:
PRJNA231221
Submitter:
University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center
Date:
2018/03/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002984195.1 (latest)
RefSeq assembly accession:
GCF_002984195.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT v. 2.3.0, HGAP v. 3.0
Genome coverage:
15.0368768789957x
Sequencing technology:
PacBio; Illumina

IDs: 1624401 [UID] 6191408 [GenBank] 6228338 [RefSeq]

See Genome Information for Providencia rettgeri

There are 120 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/09/2020 04:49:48
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.13
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,186
CDSs (total)::4,083
Genes (coding)::4,041
CDSs (with protein)::4,041
Genes (RNA)::103
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::77
ncRNAs::4
Pseudo Genes (total)::42
CDSs (without protein)::42
Pseudo Genes (ambiguous residues)::0 of 42
Pseudo Genes (frameshifted)::17 of 42
Pseudo Genes (incomplete)::21 of 42
Pseudo Genes (internal stop)::11 of 42
Pseudo Genes (multiple problems)::5 of 42
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,518,601
Total ungapped length4,518,601
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002984205.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP027418.1=NZ_CP027418.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,518,601
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