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ASM298349v1

Organism name:: Mycobacterium shigaense (high G+C Gram-positive bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: UN-152
BioSample:: SAMN06448869
BioProject:: PRJNA376862
Submitter:: national institute of infectious diseases
Date:: 2018/03/08
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_002983495.1 (latest)
RefSeq assembly accession:: GCF_002983495.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: MWON01
Assembly method:: Platanus v. Feb-2017
Expected final version:: no
Genome coverage:: 53.05x
Sequencing technology:: Illumina MiSeq

IDs: 1624061 [UID] 6190628 [GenBank] 6229038 [RefSeq]

See Genome Information for Mycobacterium shigaense

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002983495.1	=	GCF_002983495.1	ASM298349v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::02/28/2017 18:13:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,955
CDS (total)::4,902
Genes (coding)::4,689
CDS (coding)::4,689
Genes (RNA)::53
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs:: 
tRNAs::47
ncRNAs::3
Pseudo Genes (total)::213
Pseudo Genes (ambiguous residues)::0 of 213
Pseudo Genes (frameshifted)::108 of 213
Pseudo Genes (incomplete)::115 of 213
Pseudo Genes (internal stop)::37 of 213
Pseudo Genes (multiple problems)::38 of 213
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,198,926
Total ungapped length	5,198,442
Gaps between scaffolds	0
Number of scaffolds	44
Scaffold N50	345,510
Scaffold L50	5
Number of contigs	46
Contig N50	345,510
Contig L50	5
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	44

	ANI	Query coverage	Subject coverage
Declared type	99.99	99.91	99.25
Best-match type	99.99	99.91	99.25

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ASM298349v1

See Genome Information for Mycobacterium shigaense

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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