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ASM296610v1

Organism name:
Streptomyces xinghaiensis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: OlgR2-7A
BioSample:
SAMN08114311
BioProject:
PRJNA420618
Submitter:
Vavilov Institute of General Genetics
Date:
2018/02/28
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002966105.1 (latest)
RefSeq assembly accession:
GCF_002966105.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PUET01
Assembly method:
SPAdes v. 3.11.0
Expected final version:
yes
Genome coverage:
105.0x
Sequencing technology:
Illumina MiSeq

IDs: 1606231 [UID] 6131998 [GenBank] 6179048 [RefSeq]

See Genome Information for Streptomyces xinghaiensis

There are 4 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/23/2018 18:54:50
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,661
CDS (total)::6,571
Genes (coding)::6,241
CDS (coding)::6,241
Genes (RNA)::90
rRNAs::4, 5, 13 (5S, 16S, 23S)
complete rRNAs::4, 1 (5S, 16S)
partial rRNAs::4, 13 (16S, 23S)
tRNAs::65
ncRNAs::3
Pseudo Genes (total)::330
Pseudo Genes (ambiguous residues)::0 of 330
Pseudo Genes (frameshifted)::80 of 330
Pseudo Genes (incomplete)::276 of 330
Pseudo Genes (internal stop)::21 of 330
Pseudo Genes (multiple problems)::43 of 330
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,731,821
Total ungapped length7,731,821
Number of contigs150
Contig N50424,085
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)150

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,731,8211507,731,821424,08500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces xinghaiensisStreptomyces xinghaiensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000220705.2Streptomyces xinghaiensis S187type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000220705.2Streptomyces xinghaiensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.2378.5585.08
Best-match type96.2378.5585.08

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna