Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM294683v1

Organism name:: Streptomyces dengpaensis (high G+C Gram-positive bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: XZHG99
BioSample:: SAMN08469739
BioProject:: PRJNA433056
Submitter:: Unversity of Jinan
Date:: 2018/02/22
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_002946835.1 (latest)
RefSeq assembly accession:: GCF_002946835.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: other v. OCT-2017
Expected final version:: yes
Genome coverage:: 114.0x
Sequencing technology:: Illumina MiSeq; PacBio

IDs: 1590631 [UID] 6090398 [GenBank] 6157108 [RefSeq]

See Genome Information for Streptomyces dengpaensis

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002946835.1	=	GCF_002946835.1	ASM294683v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Name::GCF_002946835.1-RS_2024_03_28
Annotation Date::03/28/2024 04:38:25
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::8,144
CDSs (total)::8,049
Genes (coding)::7,606
CDSs (with protein)::7,606
Genes (RNA)::95
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::73
ncRNAs::4
Pseudo Genes (total)::443
CDSs (without protein)::443
Pseudo Genes (ambiguous residues)::0 of 443
Pseudo Genes (frameshifted)::132 of 443
Pseudo Genes (incomplete)::394 of 443
Pseudo Genes (internal stop)::20 of 443
Pseudo Genes (multiple problems)::97 of 443
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	8,710,171
Total ungapped length	8,710,171
Total number of chromosomes and plasmids	3

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP026652.1	=	NZ_CP026652.1
Plasmid unnamed1	CP026653.1	=	NZ_CP026653.1
Plasmid unnamed2	CP026654.1	=	NZ_CP026654.1

Molecule	Total Length
All	8,710,171
Chromosome	8,541,354
Plasmid unnamed1	92,208
Plasmid unnamed2	76,609

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	89.92	57.90	46.31

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

ASM294683v1

See Genome Information for Streptomyces dengpaensis

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics

Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result