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ASM292057v1

Organism name:
Streptomyces sp. Ru73 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: Ru73
BioSample:
SAMN08428760
BioProject:
PRJNA432040
Submitter:
Institute of Genomics and Integrative Biology
Date:
2018/02/06
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002920575.1 (latest)
RefSeq assembly accession:
GCF_002920575.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PQSQ01
Assembly method:
Newbler v. 2.9
Expected final version:
yes
Genome coverage:
9x
Sequencing technology:
454 and Illumina

IDs: 1556271 [UID] 5996838 [GenBank] 6010398 [RefSeq]

See Genome Information for Streptomyces sp. Ru73

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/02/2018 01:07:41
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,354
CDS (total)::7,274
Genes (coding)::7,007
CDS (coding)::7,007
Genes (RNA)::80
rRNAs::1, 3, 3 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::3, 3 (16S, 23S)
tRNAs::70
ncRNAs::3
Pseudo Genes (total)::267
Pseudo Genes (ambiguous residues)::0 of 267
Pseudo Genes (frameshifted)::101 of 267
Pseudo Genes (incomplete)::185 of 267
Pseudo Genes (internal stop)::16 of 267
Pseudo Genes (multiple problems)::31 of 267
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,211,620
Total ungapped length8,211,620
Number of contigs245
Contig N5065,242
Contig L5038
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)245

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,211,6202458,211,62065,24200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. Ru73Streptomyces sp. Ru73

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000718305.1Streptomyces nigertype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.8673.6771.29

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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