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ASM291087v1

Organism name:
Streptomyces sp. SM13 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: SM13
BioSample:
SAMN06828988
BioProject:
PRJNA384120
Submitter:
University College Cork, Ireland
Date:
2018/01/19
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002910875.1 (latest)
RefSeq assembly accession:
GCF_002910875.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NEUC01
Assembly method:
SPAdes v. 3.1.1
Expected final version:
yes
Genome coverage:
171.2x
Sequencing technology:
Illumina MiSeq

IDs: 1549901 [UID] 5974548 [GenBank] 5979978 [RefSeq]

See Genome Information for Streptomyces sp. SM13

History (Show revision history)

Comment

Global statistics

Total sequence length8,436,826
Total ungapped length8,434,687
Gaps between scaffolds0
Number of scaffolds388
Scaffold N5041,121
Scaffold L5061
Number of contigs427
Contig N5035,629
Contig L5068
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)388

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,436,8263888,434,68741,121390

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. SM13Streptomyces sp. SM13

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014655335.1Streptomyces griseussyntype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.0679.0882.76

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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