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ASM291085v1

Organism name:
Streptomyces sp. SM12 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: SM12
BioSample:
SAMN06828941
BioProject:
PRJNA384120
Submitter:
University College Cork, Ireland
Date:
2018/01/19
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002910855.1 (latest)
RefSeq assembly accession:
GCF_002910855.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NEUD01
Assembly method:
SPAdes v. 3.1.1
Expected final version:
yes
Genome coverage:
182.8x
Sequencing technology:
Illumina MiSeq

IDs: 1549891 [UID] 5974518 [GenBank] 5981218 [RefSeq]

See Genome Information for Streptomyces sp. SM12

History (Show revision history)

Comment

Global statistics

Total sequence length6,475,136
Total ungapped length6,470,314
Gaps between scaffolds0
Number of scaffolds910
Scaffold N5012,271
Scaffold L50149
Number of contigs976
Contig N5011,492
Contig L50160
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)910

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,475,1369106,470,31412,271660

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. SM12Streptomyces sp. SM12

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004305975.1Streptomyces otsuchiensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.6484.9989.42

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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