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ASM290748v1

Organism name:
Streptomyces sp. ZL-24 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ZL-24
BioSample:
SAMN06211535
BioProject:
PRJNA360497
Submitter:
University of Jinan
Date:
2018/01/30
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002907485.1 (latest)
RefSeq assembly accession:
GCF_002907485.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MTHF01
Assembly method:
SOAPdenovo v. 2.04
Expected final version:
yes
Genome coverage:
115.0x
Sequencing technology:
Illumina HiSeq

IDs: 1548171 [UID] 5961068 [GenBank] 5976218 [RefSeq]

See Genome Information for Streptomyces sp. ZL-24

History (Show revision history)

Comment

Bacteria and source DNA available from Li Yumei.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/17/2017 17:40:36
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,851
CDS (total)::6,782
Genes (coding)::6,536
CDS (coding)::6,536
Genes (RNA)::69
rRNAs::2 (5S)
complete rRNAs::2 (5S)
partial rRNAs::
tRNAs::64
ncRNAs::3
Pseudo Genes (total)::246
Pseudo Genes (ambiguous residues)::0 of 246
Pseudo Genes (frameshifted)::118 of 246
Pseudo Genes (incomplete)::150 of 246
Pseudo Genes (internal stop)::25 of 246
Pseudo Genes (multiple problems)::44 of 246
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,817,762
Total ungapped length7,817,762
Number of contigs111
Contig N50148,637
Contig L5018
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)111

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,817,7621117,817,762148,63700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. ZL-24Streptomyces sp. ZL-24

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014649215.1Streptomyces cavourensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.4686.3988.57

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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